Publications

Joy Prokash Debnath, Tanvir Hossain, Papia Rahman (2026). Deep Neural Profiling Identifies RAP1GAP2 as a Latent Regulator in Head and Neck Squamous Cell Carcinoma: Integrative Transcriptomic and Multi-omic Analysis. Preprint, published in Zenodo.

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S M Rashed Ul Islam, Md. Sayeam Khandaker, Bishnu Pada Dey, Syed Farhan Ali Razib, Kabir Hossen, Joy Prokash Debnath, Shamim Ahmed, Afzalun Nessa (2026). Partial Sequence of L1 Gene in HPV 16 and HPV 18 Isolated from Head-Neck Squamous Cell Carcinoma Tissues in Bangladesh. In Microbiology Resource Announcements, 15(10), e00298-26. PMID: 42734331.

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Kabir Hossen, Joy Prokash Debnath, Urmi Datta, Ajit Ghosh (2025). BioSalT: a multigene machine learning model for early salinity stress detection in Solanum lycopersicum. In Review.

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Joy Prokash Debnath, Kabir Hossen, Md. Sayeam Khandaker, Shawon Majid, Md Mehrajul Islam, Siam Arefin, Preonath Chondrow Dev, Saifuddin Sarker, Tanvir Hossain (2025). omicML: An Integrative Bioinformatics and Machine Learning Framework for Transcriptomic Biomarker Identification. bioRxiv; under review at PLOS One.

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Md. Sayeam Khandaker, S M Rashed Ul Islam, Joy Prokash Debnath, Kabir Hossen, Bishnu Pada Dey, Syed Farhan Ali Razib (2025). Molecular screening of Head and Neck Squamous Cell Carcinoma patients for Human Papillomavirus. Presented by S M Rashed Ul Islam at the 11th Wuhan International Symposium on Modern Virology & Viruses 2025, Wuhan, China (Best Poster Award); accepted at IPVS 2025 – International Papillomavirus Conference, Bangkok, Thailand; published in NCBI GenBank; manuscript in preparation.

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Sabrina Bintay Sayed, Md Afser Rabbi, Joy Prokash Debnath, Kabir Hossen, Ajit Ghosh (2025). Genome-wide identification and characterization of m6A regulatory genes in Soybean: Insights into evolution, miRNA interactions, and stress responses. In PLOS ONE, 20(7), e0328773. PMID: 40705797; PMCID: PMC12289078; Citations: 4.

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Joy Prokash Debnath, Kabir Hossen, Sabrina Bintay Sayed, Md. Sayeam Khandaker, Preonath Chondrow Dev, Saifuddin Sarker, Tanvir Hossain (2025). Identification of potential biomarkers for 2022 Mpox virus infection: a transcriptomic network analysis and machine learning approach. In Scientific Reports, 15(1), 2922. PMID: 39848951; PMCID: PMC11758390; Citations: 12.

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