Publications

S M Rashed Ul Islam, Md. Sayeam Khandaker, Bishnu Pada Dey, Syed Farhan Ali Razib, Kabir Hossen, Joy Prokash Debnath, Shamim Ahmed, Anwara Nessa (2026). First Report of Partial HPV 16 and HPV 18 L1 Gene Sequences from Head-Neck Squamous Cell Carcinoma Tissues in Bangladesh. Accepted at Microbiology Resource Announcements (ASM); DOI: 10.1128/mra.00298-26.

Code Dataset DOI

Kabir Hossen, Joy Prokash Debnath, Urmi Datta, Ajit Ghosh (2025). BioSalT: a multigene machine learning model for early salinity stress detection in Solanum lycopersicum. Manuscript in Preparation.

Code

Joy Prokash Debnath, Kabir Hossen, Md. Sayeam Khandaker, Shawon Majid, Md Mehrajul Islam, Siam Arefin, Preonath Chondrow Dev, Saifuddin Sarker, Tanvir Hossain (2025). omicML: an integrative tool of bioinformatics and machine learning algorithms to identify transcriptomic biomarkers. bioRxiv; under review at PLOS One.

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Joy Prokash Debnath, Tanvir Hossain, Papia Rahman (2025). Deep neural profiling reveals RAP1GAP2 as a latent regulator of tumor invasion in Oropharyngeal Carcinoma. Undergraduate thesis poster; published in Zenodo.

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Md. Sayeam Khandaker, S M Rashed Ul Islam, Joy Prokash Debnath, Kabir Hossen, Syed Farhan Ali Razib, Bishnu Pada Dey, Shamim Ahmed (2025). Molecular screening of Head and Neck Squamous Cell Carcinoma patients for Human Papillomavirus. Wuhan International Symposium 2025; accepted at IPVS 2025; published @ NCBI GenBank.

Code Best Poster Award

Sabrina Bintay Sayed, Md Afser Rabbi, Joy Prokash Debnath, Kabir Hossen, Ajit Ghosh (2025). Genome-wide identification and characterization of m6A regulatory genes in Soybean: Insights into evolution, miRNA interactions, and stress responses. In PLoS One, Public Library of Science.

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Joy Prokash Debnath, Kabir Hossen, Sabrina Bintay Sayed, Md. Sayeam Khandaker, Preonath Chondrow Dev, Saifuddin Sarker, Tanvir Hossain (2025). Identification of potential biomarkers for 2022 Mpox virus infection: a transcriptomic network analysis and machine learning approach. In Scientific Reports, Nature Publishing Group UK.

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